SNP Profiles matching EET 399 [ECU]

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._UF_12
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._RUQ_745
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._RUQ_745
_AGCCTT___GG____CCAA
16._EET_400_[ECU]
_AGCCTT_ACTTGTCT__GGCCAA
17._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
38._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
39._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
41._EET_400_[ECU]
CCAGCCTTCTACTTGTCTCCAAGGCCAA
42._RUQ_760
CCAGCCTTCTACTTGTCTCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAC
1._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
2._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
3._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
4._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
5._UF_12
TTAACGCTCTCGGTAACTACGGGGCTAC
6._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
7._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
8._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGG_CTAC
9._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCT_
10._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCT_
11._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGG_CTAC
12._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
13._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
14._RUQ_745
TTAACGCTCTCGGTAACTACGGGGCTAC
15._RUQ_745
____TTCGGT_CTACGGGGCTAC
16._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
17._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
18._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
19._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
20._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
21._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
22._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
23._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
24._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
25._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
26._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
27._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
28._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
29._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
30._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
31._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
32._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
33._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
34._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
35._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
36._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
37._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
38._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
39._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
40._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
41._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
42._RUQ_760
TTAACGCTCTCGGGAACTACGGGGCTAC
 293031323334353637383940  
_Input profile
AGGGAACCGGGGCCCTGTACATGGX_XX_X
1._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
2._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
3._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
4._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
5._UF_12
AGGGAACCGGGGCCCTGTACATGGX_XX_X
6._EET_399_[ECU]
AGGGAACCGGGGCC_GTACATGGX_XX_X
7._EET_399_[ECU]
AGGGAACCGGGGCC_GTACATGGX_XX_X
8._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
9._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
10._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
11._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
12._GC-04-047-3-11
AGGGAACCGGGGCC_GTACATGGX_XX_X
13._GC-04-047-3-11
AGGGAACCGGGGCC_GTACATGGX_XX_X
14._RUQ_745
AGGGAACCGGGGCCCTGTACATGGX_XX_X
15._RUQ_745
AG_AACCGGGGCCCTGTAC__X_XX_X
16._EET_400_[ECU]
AGGGAACCAG_CCCTGTACATGGX_XX_X
17._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
18._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
19._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
20._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
21._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
22._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
23._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
24._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
25._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
26._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
27._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
28._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
29._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
30._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
31._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
32._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
33._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
34._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
35._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
36._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
37._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
38._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
39._POUND_10_/B
AGGG_CTAGCCCCCTGTACATGGX_XX_X
40._GC-08-162-4-05
AGGG_CTAGCCCCCTGTACATGGX_XX_X
41._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
42._RUQ_760
AGGGAACTAGCCCCCTGTACATGGX_XX_X

Input profile: EET_399_[ECU]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._UF_12

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

6._EET_399_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.3 %
35 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91.3 %
40 shared markers

 View  View all  Clone  Any
Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

42._EET_400_[ECU] RUQ_760

90 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25